Edena v3: de novo short reads assembler
Development version
The program is under development. This means that some features are incomplete and that the program has not been thoroughly tested. All comments, suggestions and bugs reports are welcome.
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version 3 dev 110920 (September 20, 2011)
Improved the reliability of the paired-end algorithm
Edena3dev110920 for Linux-64
Edena3dev110920 for Linux-32
version 3 dev 110815 (August 15, 2011)
Fixed a bug that caused only half of the paired-end information to be considered
Edena3dev110815 for Linux-64
Edena3dev110815 for Linux-32
version 3 dev 110814 (August 14, 2011)
Added support for multiple paired-end dataset issued from different insert-size preparations
"Floating point exception" bug fixed
Edena3dev110814 for Linux-64
Edena3dev110814 for Linux-32
version 3 dev 110705 (July 2011)
Edena3dev110705 for Linux-64
Edena3dev110705 for Linux-32
version 2.1.1 (2008)
Obsolete
Edena 2.1.1 for Linux-32
Edena 2.1.1 for Linux-64
Edena 2.1.1 for Windows (experimental)
Staphylococcus aureus strain MW2 reads dataset (this dataset is the one used in the publication):
mw2Reads.seq.gz (63Mo)
Reference
De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer.
Hernandez D, François P, Farinelli L, Osterås M, Schrenzel J.
Genome Research. 18:802-809, 2008.
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Contact
Dr David HERNANDEZ
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